PUBLICATIONS

掲載論文・特許など

掲載論文・特許: お知らせ

ORIGINAL PUBLICATIONS

NOJI, M.; SUGITA, Y.; YAMAZAKI, Y.; MIYAZAKI, M.; SUZUKI, Y.* “PROTEIN DESIGN OF TWO-COMPONENT TUBULAR ASSEMBLIES LIKE CYTOSKELETONS”
BIORXIV (2024).
HTTPS://DOI.ORG/10.1101/2024.04.17.589732

SUBRAMANIAN, R.; SUZUKI, Y.; TALLORIN, L.; SAHU, S.; THOMPSON, M.; GIANNESCHI, N. C.; BURKART, M. D.; TEZCAN, F. A.* “ENZYME-DIRECTED FUNCTIONALIZATION OF DESIGNED, TWO-DIMENSIONAL PROTEIN LATTICES”

BIOCHEMISTRY, 60, 13, 1050 – 1062 (2021).

HTTPS://PUBS.ACS.ORG/DOI/10.1021/ACS.BIOCHEM.0C00363

ZOU, Y.; ITO, S.; YOSHINO.; SUZUKI, Y.; ZHAO, L.; KOMATSU, N. * “POLYGLYCEROL GRAFTING SHIELDS NANOPARTICLE FROM PROTEIN CORONA FORMATION TO AVOID MACROPHAGE UPTAKE”,
ACS NANO, 14, 6, 7216 – 7226 (2020).
HTTPS://PUBS.ACS.ORG/DOI/10.1021/ACSNANO.0C02289

ALBERSTEIN, R.; SUZUKI, Y.; PAESANI, F.; TEZCAN, F. A. * “ENGINEERING THE ENTROPY - DRIVEN ENERGY LANDSCAPE OF A DYNAMIC, NANOPOROUS PROTEIN ASSEMBLY”

NATURE CHEMISTRY, 10, 732 – 739 (2018).

HTTPS://WWW.NATURE.COM/ARTICLES/S41557-018-0053-4

SUZUKI, Y.; CARDONE, G.; RESTREPO, D.; ZAVATTIERI, P. D.; BAKER, T. S.; TEZCAN, F. A. * “SELF-ASSEMBLY OF COHERENTLY DYNAMIC, AUXETIC TWO-DIMENSIONAL PROTEIN CRYSTALS”

NATURE, 533, 369 – 373 (2016).

HTTPS://WWW.NATURE.COM/ARTICLES/NATURE17633

KOTLER, S. A.; BRENDER, J. B.; VIVEKANANDAN, S.; SUZUKI, Y.; YAMAMOTO, K.; MONETTE, M.; KRISNAMOORTHY, J.; WALSH, P.; CAUBLE, M.; BANASZAK-HOLL, M. M.; MARSH, E. N. G.; AND RAMAMOORTHY, A. * “HIGH-RESOLUTION NMR CHARACTERIZATION OF LOW ABUNDANCE OLIGOMERS OF AMYLOID-Β WITHOUT PURIFICATION”

SCIENTIFIC REPORTS, 5, 11811 (2015).

PARITALA, H.; SUZUKI, Y.; CARROLL, K. S. * “DESIGN, SYNTHESIS AND EVALUATION OF FE-S TARGETED ADENOSINE 5′-PHOSPHOSULFATE REDUCTASE INHIBITORS”

NUCLEOSIDES, NUCLEOTIDES AND NUCLEIC ACIDS, 34, 199 – 220 (2015).

PARITALA, H.; SUZUKI, Y.; CARROLL, K. S. * “EFFICIENT MICROWAVE-ASSISTED SOLID PHASE COUPLING OF NUCLEOSIDES, SMALL LIBRARY GENERATION, AND MILD CONDITIONS FOR RELEASE OF NUCLEOSIDE DERIVATIVES”

TETRAHEDRON LETTER, 54, 1869 – 1872 (2013).

SUZUKI, Y.; BRENDER, J. R.; SOPER, M. T.; KRISHNAMOORTHY, J.; ZHOU, Y.; RUOTOLO, B. T.; KOTOV, N. A.; RAMAMOORTHY, A.; MARSH, E. N. G. “RESOLUTION OF OLIGOMERIC SPECIES DURING THE AGGREGATION OF AΒ1-40 USING 19F NMR”

BIOCHEMISTRY, 52, 1903 – 1912 (2013).

SUBRAMANIAN, T.; PAIS, J.; LIU. S.; TROUTMAN, J. M.; SUZUKI, Y.; SUBRAMANIAN, K. L.; FIERKE, C. A.; ANDRES, D. A.; SPIELMANN, H. P. * “FARNESYL DIPHOSPHATE ANALOGUES WITH ARYL MOIETIES ARE EFFICIENT ALTERNATE SUBSTRATES FOR PROTEIN FARNESYLTRANSFERASE”

BIOCHEMISTRY, 51, 8307 – 8319 (2012).

SUZUKI, Y.; BRENDER, J. R.; HARTMAN, K.; RAMAMOORTHY, A.; MARSH, E. N. G. “ALTERNATIVE PATHWAYS OF HUMAN ISLET AMYLOID POLYPEPTIDE AGGREGATION DISTINGUISHED BY 19F NMR DETECTED KINETICS OF MONOMER CONSUMPTION”

BIOCHEMISTRY, 51, 8154 – 8162 (2012).

CHENG, R. P. *; WENG, Y.; WANG, W.; KOYAC, M. J.; SUZUKI, Y.; WU, H.; YANG, A.; HSU, H.; KUO, H.; GIRINATH, P. “HELIX FORMATION AND CAPPING ENERGETICS OF ARGININE ANALOGS WITH VARYING SIDE CHAIN LENGTH”

AMINO ACIDS, 36, 493 – 499 (2012)

SUZUKI, Y.; BUER, B. C.; AI-HASHIMI, H. M.; MARSH, E. N. G. * “USING FLUORINE NMR TO PROBE CHANGES IN STRUCTURE AND DYNAMICS OF MEMBRANE-ACTIVE PEPTIDES INTERACTING WITH THE LIPID BILAYER”

BIOCHEMISTRY, 50, 5979–5987 (2011).

CHENG, R. P. *; GIRINATH, P.; SUZUKI, Y.; KUO, H.; HSU, H.; WANG, W.; YANG, P.; GULLICKSON, D.; WU, C.; KOYACK, J. M.; CHIU, H.; WENG, Y.; HART, P.; KOKONA, B.; FAIRMAN, R.; LIN, T.; BARRETT. O. “POSITIONAL EFFECTS ON HELICAL ALA-BASED PEPTIDES”

BIOCHEMISTRY, 49, 9372–9384 (2010).

CHIU, H.; SUZUKI, Y.; GULLICKSON, D.; AHMAD, R.; KOKONA, B.; FAIRMAN, R.; CHENG, R.P. * “HELIX PROPENSITY OF HIGHLY FLUORINATED AMINO ACIDS”

JOURNAL OF AMERICAN CHEMICAL SOCIETY, 128, 15556-15557 (2006).

REVIEW

MARSH, E. N. G.*; SUZUKI, Y. “USING 19F NMR TO PROBE BIOLOGICAL INTERACTIONS OF PROTEINS AND PEPTIDES.”

ACS CHEMICAL BIOLOGY, 9, 1242 – 1250 (2014).

PATENT

TEZCAN, F. A.; SUZUKI, Y. METHOD FOR FABRICATING TWO-DIMENSIONAL PROTEIN CRYSTALS”,

PCT: WO2017011705A1，JANUARY 2017.

OTHERS

鈴木雄太，“バイオナノロボット創生を目指したタンパク質デザイン工学” 化学と工業, 72-7, AUGUST 2019

鈴木雄太, “SUNY/ミシガン/UCSD大学留学体験記～FROM ART TO CHEMISTRY～” 生命化学研究レター, 53, 26–33 (2017)

鈴木雄太, “タンパク質デザインによる機能性 2D バイオマテリアルの創生および今後の展開” 蛋白質科学会アーカイブ, 12, EESSAY 09 (2019)

PUBLICATIONS

ORIGINAL PUBLICATIONS

NOJI, M.; SUGITA, Y.; YAMAZAKI, Y.; MIYAZAKI, M.; SUZUKI, Y.* “PROTEIN DESIGN OF TWO-COMPONENT TUBULAR ASSEMBLIES LIKE CYTOSKELETONS” BIORXIV (2024). HTTPS://DOI.ORG/10.1101/2024.04.17.589732

SUBRAMANIAN, R.; SUZUKI, Y.; TALLORIN, L.; SAHU, S.; THOMPSON, M.; GIANNESCHI, N. C.; BURKART, M. D.; TEZCAN, F. A.* “ENZYME-DIRECTED FUNCTIONALIZATION OF DESIGNED, TWO-DIMENSIONAL PROTEIN LATTICES”

BIOCHEMISTRY, 60, 13, 1050 – 1062 (2021).

HTTPS://PUBS.ACS.ORG/DOI/10.1021/ACS.BIOCHEM.0C00363

ZOU, Y.; ITO, S.; YOSHINO.; SUZUKI, Y.; ZHAO, L.; KOMATSU, N. * “POLYGLYCEROL GRAFTING SHIELDS NANOPARTICLE FROM PROTEIN CORONA FORMATION TO AVOID MACROPHAGE UPTAKE”, ACS NANO, 14, 6, 7216 – 7226 (2020). HTTPS://PUBS.ACS.ORG/DOI/10.1021/ACSNANO.0C02289

ALBERSTEIN, R.; SUZUKI, Y.; PAESANI, F.; TEZCAN, F. A. * “ENGINEERING THE ENTROPY - DRIVEN ENERGY LANDSCAPE OF A DYNAMIC, NANOPOROUS PROTEIN ASSEMBLY”

NATURE CHEMISTRY, 10, 732 – 739 (2018).

HTTPS://WWW.NATURE.COM/ARTICLES/S41557-018-0053-4

SUZUKI, Y.; CARDONE, G.; RESTREPO, D.; ZAVATTIERI, P. D.; BAKER, T. S.; TEZCAN, F. A. * “SELF-ASSEMBLY OF COHERENTLY DYNAMIC, AUXETIC TWO-DIMENSIONAL PROTEIN CRYSTALS”

NATURE, 533, 369 – 373 (2016).

HTTPS://WWW.NATURE.COM/ARTICLES/NATURE17633

KOTLER, S. A.; BRENDER, J. B.; VIVEKANANDAN, S.; SUZUKI, Y.; YAMAMOTO, K.; MONETTE, M.; KRISNAMOORTHY, J.; WALSH, P.; CAUBLE, M.; BANASZAK-HOLL, M. M.; MARSH, E. N. G.; AND RAMAMOORTHY, A. * “HIGH-RESOLUTION NMR CHARACTERIZATION OF LOW ABUNDANCE OLIGOMERS OF AMYLOID-Β WITHOUT PURIFICATION”

SCIENTIFIC REPORTS, 5, 11811 (2015).

PARITALA, H.; SUZUKI, Y.; CARROLL, K. S. * “DESIGN, SYNTHESIS AND EVALUATION OF FE-S TARGETED ADENOSINE 5′-PHOSPHOSULFATE REDUCTASE INHIBITORS”

NUCLEOSIDES, NUCLEOTIDES AND NUCLEIC ACIDS, 34, 199 – 220 (2015).

PARITALA, H.; SUZUKI, Y.; CARROLL, K. S. * “EFFICIENT MICROWAVE-ASSISTED SOLID PHASE COUPLING OF NUCLEOSIDES, SMALL LIBRARY GENERATION, AND MILD CONDITIONS FOR RELEASE OF NUCLEOSIDE DERIVATIVES”

TETRAHEDRON LETTER, 54, 1869 – 1872 (2013).

SUZUKI, Y.; BRENDER, J. R.; SOPER, M. T.; KRISHNAMOORTHY, J.; ZHOU, Y.; RUOTOLO, B. T.; KOTOV, N. A.; RAMAMOORTHY, A.*; MARSH, E. N. G. * “RESOLUTION OF OLIGOMERIC SPECIES DURING THE AGGREGATION OF AΒ1-40 USING 19F NMR”

BIOCHEMISTRY, 52, 1903 – 1912 (2013).

SUBRAMANIAN, T.; PAIS, J.; LIU. S.; TROUTMAN, J. M.; SUZUKI, Y.; SUBRAMANIAN, K. L.; FIERKE, C. A.; ANDRES, D. A.; SPIELMANN, H. P. * “FARNESYL DIPHOSPHATE ANALOGUES WITH ARYL MOIETIES ARE EFFICIENT ALTERNATE SUBSTRATES FOR PROTEIN FARNESYLTRANSFERASE”

BIOCHEMISTRY, 51, 8307 – 8319 (2012).

SUZUKI, Y.; BRENDER, J. R.; HARTMAN, K.; RAMAMOORTHY, A.*; MARSH, E. N. G. * “ALTERNATIVE PATHWAYS OF HUMAN ISLET AMYLOID POLYPEPTIDE AGGREGATION DISTINGUISHED BY 19F NMR DETECTED KINETICS OF MONOMER CONSUMPTION”

BIOCHEMISTRY, 51, 8154 – 8162 (2012).

CHENG, R. P. *; WENG, Y.; WANG, W.; KOYAC, M. J.; SUZUKI, Y.; WU, H.; YANG, A.; HSU, H.; KUO, H.; GIRINATH, P. “HELIX FORMATION AND CAPPING ENERGETICS OF ARGININE ANALOGS WITH VARYING SIDE CHAIN LENGTH”

AMINO ACIDS, 36, 493 – 499 (2012)

SUZUKI, Y.; BUER, B. C.; AI-HASHIMI, H. M.; MARSH, E. N. G. * “USING FLUORINE NMR TO PROBE CHANGES IN STRUCTURE AND DYNAMICS OF MEMBRANE-ACTIVE PEPTIDES INTERACTING WITH THE LIPID BILAYER”

BIOCHEMISTRY, 50, 5979–5987 (2011).

CHENG, R. P. *; GIRINATH, P.; SUZUKI, Y.; KUO, H.; HSU, H.; WANG, W.; YANG, P.; GULLICKSON, D.; WU, C.; KOYACK, J. M.; CHIU, H.; WENG, Y.; HART, P.; KOKONA, B.; FAIRMAN, R.; LIN, T.; BARRETT. O. “POSITIONAL EFFECTS ON HELICAL ALA-BASED PEPTIDES”

BIOCHEMISTRY, 49, 9372–9384 (2010).

CHIU, H.; SUZUKI, Y.; GULLICKSON, D.; AHMAD, R.; KOKONA, B.; FAIRMAN, R.; CHENG, R.P. * “HELIX PROPENSITY OF HIGHLY FLUORINATED AMINO ACIDS”

JOURNAL OF AMERICAN CHEMICAL SOCIETY, 128, 15556-15557 (2006).

REVIEW

MARSH, E. N. G.*; SUZUKI, Y. “USING 19F NMR TO PROBE BIOLOGICAL INTERACTIONS OF PROTEINS AND PEPTIDES.”

ACS CHEMICAL BIOLOGY, 9, 1242 – 1250 (2014).

PATENT

TEZCAN, F. A.; SUZUKI, Y. METHOD FOR FABRICATING TWO-DIMENSIONAL PROTEIN CRYSTALS”,

PCT: WO2017011705A1，JANUARY 2017.

OTHERS

鈴木雄太，“バイオナノロボット創生を目指したタンパク質デザイン工学” 化学と工業, 72-7, AUGUST 2019

鈴木雄太, “SUNY/ミシガン/UCSD大学留学体験記 ～FROM ART TO CHEMISTRY～” 生命化学研究レター, 53, 26–33 (2017)

鈴木雄太, “タンパク質デザインによる機能性 2D バイオマテリアルの創生および今後の展開” 蛋白質科学会アーカイブ, 12, EESSAY 09 (2019)

NOJI, M.; SUGITA, Y.; YAMAZAKI, Y.; MIYAZAKI, M.; SUZUKI, Y.* “PROTEIN DESIGN OF TWO-COMPONENT TUBULAR ASSEMBLIES LIKE CYTOSKELETONS”
BIORXIV (2024).
HTTPS://DOI.ORG/10.1101/2024.04.17.589732

ZOU, Y.; ITO, S.; YOSHINO.; SUZUKI, Y.; ZHAO, L.; KOMATSU, N. * “POLYGLYCEROL GRAFTING SHIELDS NANOPARTICLE FROM PROTEIN CORONA FORMATION TO AVOID MACROPHAGE UPTAKE”,
ACS NANO, 14, 6, 7216 – 7226 (2020).
HTTPS://PUBS.ACS.ORG/DOI/10.1021/ACSNANO.0C02289

SUZUKI, Y.; BRENDER, J. R.; SOPER, M. T.; KRISHNAMOORTHY, J.; ZHOU, Y.; RUOTOLO, B. T.; KOTOV, N. A.; RAMAMOORTHY, A.; MARSH, E. N. G. “RESOLUTION OF OLIGOMERIC SPECIES DURING THE AGGREGATION OF AΒ1-40 USING 19F NMR”

SUZUKI, Y.; BRENDER, J. R.; HARTMAN, K.; RAMAMOORTHY, A.; MARSH, E. N. G. “ALTERNATIVE PATHWAYS OF HUMAN ISLET AMYLOID POLYPEPTIDE AGGREGATION DISTINGUISHED BY 19F NMR DETECTED KINETICS OF MONOMER CONSUMPTION”

鈴木雄太, “SUNY/ミシガン/UCSD大学留学体験記～FROM ART TO CHEMISTRY～” 生命化学研究レター, 53, 26–33 (2017)